Browse of TCMCG056C27124 protein

CDS

Accession Number	TCMCG056C27124
gbkey	CDS
Protein Id	XP_031399698.1
Location	complement(join(24392904..24393520,24393873..24394244,24394532..24395624,24395975..24396270,24396732..24396810,24396914..24397001,24397471..24397615,24398325..24398622,24399121..24400470,24401055..24401282,24401486..24401720,24401976..24402035,24402398..24402724,24402812..24402890,24403490..24403563,24403707..24403784,24403944..24404024,24404108..24404195,24404467..24404553,24405421..24405560,24405678..24405751,24406217..24406240))
Gene	LOC116210045
GeneID	116210045
Organism	Punica granatum

Protein

Length	1970aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA580467
db_source	XM_031543838.1
Definition	mediator of RNA polymerase II transcription subunit 13 [Punica granatum]

EGGNOG-MAPPER Annotation

COG_category	K
Description	Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko03021        [VIEW IN KEGG]
KEGG_ko	ko:K15164        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko04919        [VIEW IN KEGG] map04919        [VIEW IN KEGG]
GOs	GO:0003674        [VIEW IN EMBL-EBI] GO:0005215        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0006810        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008643        [VIEW IN EMBL-EBI] GO:0015144        [VIEW IN EMBL-EBI] GO:0016020        [VIEW IN EMBL-EBI] GO:0016021        [VIEW IN EMBL-EBI] GO:0022857        [VIEW IN EMBL-EBI] GO:0031224        [VIEW IN EMBL-EBI] GO:0034219        [VIEW IN EMBL-EBI] GO:0040034        [VIEW IN EMBL-EBI] GO:0044425        [VIEW IN EMBL-EBI] GO:0050789        [VIEW IN EMBL-EBI] GO:0050793        [VIEW IN EMBL-EBI] GO:0051119        [VIEW IN EMBL-EBI] GO:0051179        [VIEW IN EMBL-EBI] GO:0051234        [VIEW IN EMBL-EBI] GO:0051239        [VIEW IN EMBL-EBI] GO:0055085        [VIEW IN EMBL-EBI] GO:0065007        [VIEW IN EMBL-EBI] GO:0071702        [VIEW IN EMBL-EBI] GO:0090213        [VIEW IN EMBL-EBI] GO:2000026        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGTGGACTAATGTATTCAAAATTGGAGGGCTTCATCAGCTTACTTGGTTCCAGTTTCTTCCCCTTGAATCTGATTTGAATTCTCTAGCAGATAAAAGTTTGAAGCTGGAAGCAAGGGATGCTGCAACGTATTTGGTTCTTTCATCGCATCTACAATTGCAGAAGAAAGGATTTCTTAGTACTTGGACAAATTCTTTTGTAGGACCTTGGGACCCCTCTCAGGGAGTTCACAATCCTGATGAAAAGATCAAGCTATGGCTTTTTCTTCCGGGCCGCCATTCATCTATTGCTGAGGCTGCACAAGCGTCAGTATCCAAATTAAGAGTTGTTGCATCCGGTATCTGGTTGTCTCCTGGGGACTCAGAAGAGGTTGCAGCTGCTCTCTCCCAAGCTCTGAGAAATTGTATAGAGAGATCATTGGGTGCCCACTCTTATGTGAGATATGGAGATGTATATTCAAAGTACAATCCATTCCATAGTGAAGAAATTTACAGGAGAGGACAACCGACAGTTGAATTTGTCTTTGCTGCTACAGAGGAGGCAATCTTTGTGCATGTTATAATTTCTGCAAAGCATGTACGGGCGCTTTCCTGTGATGACATGGAAAAAGTATCGAAGCGCTCCAGTTCTGCTGGAAGACTTCCAGTGATCGTTTCTCCTAATGGTATGCGTGGAATGCTAACTGGATGTTGTCCTGGCGATCTTGTCAAGCAAGTCTACTTAAGCTCTGGCAAGTCAAAGGCTTCAAATTCACTTGTTGGGTTACCTCCCCATGTTTCTCAAGGATTTAGCTGCCAACTGAGGGGGCAAAATTGTTTTGCTGAAGTTACCATTGGAAGCCCCATATCTGAAACTGACAGGGCGTCTCAATCAGGCTTACATACTGTTAAAAGTATAGCTAAGAATCATGTTGCTGAATCACCTGCTAATGGAAGAGGAGATCAGAAGGGTTCGCAAGATCGGTTCGCGCATGAGAAGACACTTGTTTACCCAGTCGAGGGAGTGCTTGTCCCAGTTCTGCAAACGTCACTGACTAGAACTTCCTTGAAAAGATTTTGGCTGCAAAATTGGTTGGGGCCATCAATGCATGGTTCATCTTTCTTCATGCATTGTGCCCCTCAGTTTGATTCTTTTGATGGAGCGCCCGAAACAAATGGAGTACGTTCGCAGCATAGTTATTACAGTAGCAGCAATAGTAATTCTAGCAGCTTAAGCAGCAGTTCAAGTGAAACCGATAACAGGATGACTGCAAGAGGTGGTGATCTTGATGCTGATGCTGATTCTTTAACATGTAAACAGTCGGAAATATCTTCAGCTGATCATTTGGCGAATGATCATGTCAAAGCGGGGTCAAAACGTTCTCGAGCAGCTGCTGTACAAGATGGGTATAAGTCTGATTTTGGTTCTTTAGAAGTTAATGATTCAGCAATTACAGGAATTGCTACTGAGCAGATAGGATCTCATTGGGATTGGGACGATGATGATAGAGGTGTAGGCACAGATATCCAAGCTCTACTATCCGAGTTTGGAGACTTTGGTGACTTCTTCGAAAATGATGCTTTGCCCTTTGGAGAGCCCCCAGGAACTGCAGAGTCGCATGCTCTTATGTTTTCTGGTTCAGATTTGGGAGTAGGTAGCAGTCCTGTTGGTGTTATGGACGTTTCAGATGAGATGCTTCTGCCTGTCGGATTTTCATCCTTTGAGAGCTTCAACCCTCCGCCAGCAGTTACTGAGGAATGTATTAGTAAAAGTCAAGAGATTACCACTAATTCCTTACCATCGGCTCCGATTCCTAACACTCCGGTGTCTACTTCTGGTGATTTTGACCATCTAATTAAAGCCGAAGCATTTATGACCTTTGCGCCAGAGTATGGAGCAATTGAGGCTCCATTAAGTGATATTTCTTCACCAATTTTTAGAAGCCCTTATCTGCCTAAGTCTCGCAATGTGGAGAGTGCGAATTCTAGTACAAATAATTATAGATATGGAGCAACACCACCATCTTCTCCTCGTGTCATTGGATCTGATGAGAAGAGCAGCTTGCCTCTGACCTCAAAAAATTATCAAGGCAGGCATGATTTGGGCGCTGCCCAGCACTCAAAAAATTATTATACGCATGTGGACGGCAGGAAAGTACCAGATGGGAAGAGATCTAATGCTACTTTGGAGGCTGCTCAATCTTCAGTTTCATTCTCTAATATGAGTTCTACAAATGCCGTAAAATCTGTCCAGAGAAGAGTGAGTGAAGGCACTTCTGAACTGGACCACTTCCTGCTTTCTTCAAGGATTGCAATTGCTATGGACATTGAATGCTTGCTGATCCAATCTTATATGTGCAAGGCACGACACACATTGTTATCTTCTGGTAGCACATGTTCTATAAGTTCAGGTAGGTTAACTGGTGGCAGCATCTTAAATACTCTGCCAGGTGAGCAAAGCACTTTGACGGATAATGTATCTGGCATGTATGAGGTAAAGAAGAAAGAATCCATTCCAGTTAGAATTGCTGGTGATATTGATGGACTGCTAGATGGGCACCTTAATGCACCGGTAAATGTTTGGCGCCCTGTTGGAGTTCCTAAAGTTCCCAAACAAAGTAATTCTCCAGGTATAGAAGTTAGTCCGTCATTGCCCCACAACTCCTATGGTGAGGAAGGTATCCTCTCCTATGGGCAAAGGCAGCCTCTGCAGGAGCTTCTTGATGGGCTACCATTGCTAGTCCAACAGGCTACTTCCTTTGTGGATGTCACTTTGGATGCAGAGTGTGGTGATGGACCTTATGGTTGGCTTGCATTGGAAGAACAAGGGCGTCGTGGGTTTTGTTGTGGACCCTCCATGGTACATGCGGGCTGTGGTGGTACCTTGTCATCGTGCCATTTTCTTGATATTGCTGGTGTGGAGCTGGTGGACCCACTTTCTGCTGATGTTCATGCATCATCAGTGCTTAGTTTGCTGCAATCGGACATAAAATCAGCATTAAAAGCTGCTTTTGGAAACTTGGATGGTCTGTTTGGCCAAAGAAGAAACTTGGAGGGTCCATTGACCATCCAAGATTGGTGCAAGGGACGTAGTCAGGCAGCTGATTCTGGGAACCTGGGGGATGGATTTTCGGCAGAATCCAGCGTAGGTGATTGTAGAGATCATTCAAGTACTTTGACTCTTTCTGGTGGAGAGCCATTCAGCCCATGTGTATCTACTGCAGTTGCATCTTCCAACCTAAAGGGATCAATTGGAATGGATGGTGGTAGAGCTGATGATTTAAGTCAAAGGAGATCGAGCCAAGAAAGCAGTTCAGAGTCTGAGCAGCAATTTAGCTCTCGACGGAAGCCGACACTTTACATTCTTCCTTTCCCTGCAATTCTTGTCGGGTATCAGGATGACTGGCTTAAGACATCAGCAAGCTCTCTACAATTGTGGGAAAAGGCTCCTCTCGAACCATATGCTCTACAAAAACCTATTACTTACTCCGTGATTTGCCCCGATATCGATCCACTTACTTCTGCTGCTGCTGATTTTTTCCAACAACTTGGGACTGTTTATGAGACATGCAAGCTTGGGACGCACACACCTCAGACTCTCGGAAACCAAATGGAGATAGACTCTGGAAAATCTTCGACTTCTGGTTTTGTTTTCCTGGATTGCCCTCAATCGATGAAGATGGATAGCAGCAATGCTTCTCTTGTGGGATCAATAAGTGACTATTTCCTTTCTTTGTCCAATGGCTGGGACTTGACGAGCTATCTTAAGTCCCTCTCAAAGACTCTCAAAACTTTGAAACTTGGTTTTAGCATGCCAACAAATCCCAAAGAAGGAAGCAGTGGTGCTTCAATGGTGATCTATGTCGTGTGCCCCTTCCCTGATCCTATGGCAATTCTCAAGACAGTAATTGAATCGTCTGTTGCAGTGGGATCGGTGGTTCTCCCATCAGATAGGAGAGCTGCATTACACAATCAGGTTGGGAAGGCACTGAGCTGCTCAGCAGGTGTTGACGAAGCATCAATATCCAACATTCTGGTTCTTTCAGGGTTCAGTGTTCCTAAGGTAGTCCTTCAGATTGTGACAGTTGATACTATATTCAGAGTTACAAGCCCAACTCTCAGTGAGCTCACTGTTCTTAAGGAGACAGCTTTCACTGTCTACGGCAAGGCTCGGCGAATTTCTCGAGGATCTTCCCCTGACGTTCAGTCATCATCCTTATCTTCTAGATCACAGTCGATCCTGACCCAAATGACCTCTCCTATGTCTTCAATGTGGAAAGACTGTGTTGGTCCTCGAATGAGCGGGCCTTCCCTTCCCAGGGAGGGTGAAATGGATGCCAATATGAGGACTGCTGCTTGGGAGAATTCGTGGCAAACAAGGACTGGTGTATTAAGCTGTGATATCAGTAGAAGCGGAGATTTTCCATTCCACGAGGAAACCCACTTCATGTTCGAACCTCTCTTTATTCTATCTGAACCTGGTTCTGTAGAGCATGGAGTTTCCCCAGCAGCGTTTGGTGGTTCCATCTCTGAATCCTCAAAACCTCAGTCAGATGATAATACTGGAAGTTACTTGCATCCCGGGAGTTCAACAGGAACTGTAGATACGGGATCTAGCTCTCAAATGGATGGATCTGAGCCTGATATCTATGGTCCAGGCCATCAAAAACTCCCGAGCATACATTGTTGCTATGGATGGACAGAAGATTGGCGATGGCTAGTTTGCATATGGACCGATGCGCGGGGAGAATTACTTGATAGCCATATTTTCCCTTTTGGCGGAATCAGTAGTAGGCAGGACACAAAGGGTTTACAGTGCTTATTTGCACAAGTTCTACAGCAAGGCTGTCAAATTCTTCAGGCATGTTCCTCTGATAATAGTGCCGTGAAGCCCAGAGATTTTGTGATCACCCGCATTGGAAGCTTTTACGAACTTGAATACCTAGAGTGGCAGAAAGCCATTTATTCAGTTGGAGGAGCTGAGATGAAGAGCTGGTCCCTGCAATTAAGGCGGTTTGGGTCTGACGGAATCTCCACAGGCAATAATGGTGCCTCATTGCAGCAGCAGGAGATGAGTTTGATTCAAGAGAGAGGTCTGCCTTCCTCACCAAGCCCTCTTTATAGTCCTCACTCGAAGACATCAGGATACATGAAAGGTTCTCTGGGCCAACAAACTGCTAGAAAGCAGCTGATGGGTGGACAAGCAGCAGCTGATGGGGCAAGAGGGTTGCTCCAGTGGGTGCAGAGCATCAGCTTTGTTACAATCTCGGTTGATCACTCATTGCATCTAGTTCTTCAAGCAGATTCGACGTCTTCAGGAGGGTCTCAAATGGGGTCCGGTACGGGACCACCACCAAGCTACCTCGAAGGCTTTACTCCTGTGAAAGCACTTGGTTCGGCATCTGCTTCATACCTTCTAATCCCATCACCGAGCATGCGGTTCCTCCCTTCCACCCCTCTCCAGCTTCCCACATGCCTCACTGCTGAGTCTCCTCCACTGGCCCACCTCCTCCATAGCAAGGGCCCCTCGATCCCTTTATCCACTGCCTTTGTGGTCTCAAGGGCTGTCCCTTCAATGAGGAAAGATTTTCGGGGCAACTTGAAGGAAGAGTGGCCTTCGGTTCTCACAGTTGGCCTCATTGACCACTATGGAGGTGGTAACAGTGGTAACCACCACCACCAAGAGAAGATGGGAAGAGGTGGAATCAAGCAAAGAAGCATAAACCCCGAGCCTAGAGATTTCGAAGTGCAGACCCATTCAGTTCTCGAGTCTGTAGCAGCAGAGCTTCAGGCCCTCTCGTGGATGACTGTTAGTCCTGCATACAAAGAACGGAGAACCGCCCTTCCCTTCCATTGCGACATGGTATTGCGGCTGAGGCGGCTCCTCCATTTCGCGGATAAGGAGATCTTCTCACAGCAACAGGAGAAGTCATAG

Protein:   MWTNVFKIGGLHQLTWFQFLPLESDLNSLADKSLKLEARDAATYLVLSSHLQLQKKGFLSTWTNSFVGPWDPSQGVHNPDEKIKLWLFLPGRHSSIAEAAQASVSKLRVVASGIWLSPGDSEEVAAALSQALRNCIERSLGAHSYVRYGDVYSKYNPFHSEEIYRRGQPTVEFVFAATEEAIFVHVIISAKHVRALSCDDMEKVSKRSSSAGRLPVIVSPNGMRGMLTGCCPGDLVKQVYLSSGKSKASNSLVGLPPHVSQGFSCQLRGQNCFAEVTIGSPISETDRASQSGLHTVKSIAKNHVAESPANGRGDQKGSQDRFAHEKTLVYPVEGVLVPVLQTSLTRTSLKRFWLQNWLGPSMHGSSFFMHCAPQFDSFDGAPETNGVRSQHSYYSSSNSNSSSLSSSSSETDNRMTARGGDLDADADSLTCKQSEISSADHLANDHVKAGSKRSRAAAVQDGYKSDFGSLEVNDSAITGIATEQIGSHWDWDDDDRGVGTDIQALLSEFGDFGDFFENDALPFGEPPGTAESHALMFSGSDLGVGSSPVGVMDVSDEMLLPVGFSSFESFNPPPAVTEECISKSQEITTNSLPSAPIPNTPVSTSGDFDHLIKAEAFMTFAPEYGAIEAPLSDISSPIFRSPYLPKSRNVESANSSTNNYRYGATPPSSPRVIGSDEKSSLPLTSKNYQGRHDLGAAQHSKNYYTHVDGRKVPDGKRSNATLEAAQSSVSFSNMSSTNAVKSVQRRVSEGTSELDHFLLSSRIAIAMDIECLLIQSYMCKARHTLLSSGSTCSISSGRLTGGSILNTLPGEQSTLTDNVSGMYEVKKKESIPVRIAGDIDGLLDGHLNAPVNVWRPVGVPKVPKQSNSPGIEVSPSLPHNSYGEEGILSYGQRQPLQELLDGLPLLVQQATSFVDVTLDAECGDGPYGWLALEEQGRRGFCCGPSMVHAGCGGTLSSCHFLDIAGVELVDPLSADVHASSVLSLLQSDIKSALKAAFGNLDGLFGQRRNLEGPLTIQDWCKGRSQAADSGNLGDGFSAESSVGDCRDHSSTLTLSGGEPFSPCVSTAVASSNLKGSIGMDGGRADDLSQRRSSQESSSESEQQFSSRRKPTLYILPFPAILVGYQDDWLKTSASSLQLWEKAPLEPYALQKPITYSVICPDIDPLTSAAADFFQQLGTVYETCKLGTHTPQTLGNQMEIDSGKSSTSGFVFLDCPQSMKMDSSNASLVGSISDYFLSLSNGWDLTSYLKSLSKTLKTLKLGFSMPTNPKEGSSGASMVIYVVCPFPDPMAILKTVIESSVAVGSVVLPSDRRAALHNQVGKALSCSAGVDEASISNILVLSGFSVPKVVLQIVTVDTIFRVTSPTLSELTVLKETAFTVYGKARRISRGSSPDVQSSSLSSRSQSILTQMTSPMSSMWKDCVGPRMSGPSLPREGEMDANMRTAAWENSWQTRTGVLSCDISRSGDFPFHEETHFMFEPLFILSEPGSVEHGVSPAAFGGSISESSKPQSDDNTGSYLHPGSSTGTVDTGSSSQMDGSEPDIYGPGHQKLPSIHCCYGWTEDWRWLVCIWTDARGELLDSHIFPFGGISSRQDTKGLQCLFAQVLQQGCQILQACSSDNSAVKPRDFVITRIGSFYELEYLEWQKAIYSVGGAEMKSWSLQLRRFGSDGISTGNNGASLQQQEMSLIQERGLPSSPSPLYSPHSKTSGYMKGSLGQQTARKQLMGGQAAADGARGLLQWVQSISFVTISVDHSLHLVLQADSTSSGGSQMGSGTGPPPSYLEGFTPVKALGSASASYLLIPSPSMRFLPSTPLQLPTCLTAESPPLAHLLHSKGPSIPLSTAFVVSRAVPSMRKDFRGNLKEEWPSVLTVGLIDHYGGGNSGNHHHQEKMGRGGIKQRSINPEPRDFEVQTHSVLESVAAELQALSWMTVSPAYKERRTALPFHCDMVLRLRRLLHFADKEIFSQQQEKS